population genomics Archives « Botany One

A flow diagram showing the three sequential steps of cageminer candidate gene prioritization. In the first step, all genes within a sliding window relative to each SNP are selected as putative candidates. In the second step, cageminer performs an enrichment analysis and find candidates from step 1 that co-occur in modules enriched in guide genes. The third step selects candidate genes from step 2 correlated with conditions of interest.

Cells, Genes & Molecules Computational Models Life

New open source software for identifying candidate genes

Introducing cageminer, an R/Bioconductor package to prioritize candidate genes by integrating GWAS and gene coexpression networks

Taxonomy & Evolution

Where did greater yams come from? A global effort to track the ‘yummy’ dispersal history of a polyploid plant

Diuris flower.

Annals of Botany

Diuris population genomics